Carnivorous plant’s deadly recipe reveals antibacterialsNepenthes alata - also known as the pitcher plant for its bottle-shaped leaves – is a killer.
This evil and rather exciting green carnivore has now had its secret recipe revealed by scientists in Japan, who have separated the proteins by gel electrophoresis and matched them to proteins in a public database. And some of its sweet but deadly proteins are natural antibiotics. By inhibiting bacterial growth, the plant can absorb as much nutrition as possible from its tiny victim, without any competition from bugs.
10th Feb 2008 Heat powered glider explores the oceansIt is often said that we have seen more of the surface of Mars than we have of our own planet. This is because 2/3 of our planet is covered with ocean, which is opaque to most of the forms of light we use to find out so much about the land with. You can send probes down to visit the bottom of the ocean but this requires a hugely expensive ship on the surface to power them and move them around.
Various groups have come up with a way of moving autonomous robots around the oceans powered by the water itself. If you throw a paper aeroplane, it falls down, but because of its aerodynamic shape it doesn't fall vertically it glides down following a diagonal course powered by its potential energy. You can do the same thing in the ocean so if you sink 4km you can glide up to 20km forwards, you then have to stop as you have reached the bottom of the ocean, unless you can make yourself buoyant again, as you can then glide another 20km upwards, you can then work out where you are using GPS and communicate with your base station then, loose some buoyancy and sink again. The problem is that you need energy to gain and loose the buoyancy required to float and sink which uses up power in your batteries. A company called Webb research has harnessed the difference in temperature at the top and bottom of the ocean to provide this energy and so power the glider. Inside the glider they have tubes of wax which when it heats up near the surface expands compressing gas which is stored in a tank. The glider then allows oil to flow from a bladder outside into the body, reducing the glider's volume, making it sink. When it reaches a pre-set depth the compressed gas is used to push the oil back out again making the glider float back up to the surface.
The glider can also extract some electrical energy from this temperature difference by using peltier coolers in reverse so the test vehicle has so far travelled 1400km across the Virgin Islands Baisin in the West Indies, sinking and floating at least 20 times, moving at between 1 and 2 kph with no interference from outside. In theory this vehicle should have a range of 40000km and only have to be picked up every 6 months or so giving us an unprecedented view of what is going on in the oceans.
10th Feb 2008 Food for thought as researchers uncover appetite activatorScientists looking for ways to combat obesity have found an enzyme that activates an appetite-stimulating hormone.
When injected into animals and human subjects ghrelin boosts the urge to eat, whilst obese animals which have been genetically modified to lack the hormone or its receptor instead lose weight. But the hormone only exerts these appetite-inducing effects after it has been chemically modified by the addition of the carbon tail. Previous research in fruit flies had shown that enzymes that add carbon chains to proteins like ghrelin all share a similar fingerprint sequence. So the researchers set about screening the mouse genetic code to look for signs of the same sequences. Using this approach they tracked down 11 genes and with one of them they hit the jackpot. By adding the gene to cells in a dish they were able to trigger the cells to produce the active form of ghrelin, demonstrating that they had identified the right gene. Promisingly, ghrelin seems to be the only hormone in the body, at least as far as scientists can tell, that carries this 8-carbon unit activating tail, so scientists think that it should be relatively simple to block it and so combat the urge to binge. "The discovery of GOAT opens the way to a search for chemical inhibitors that may be useful in controlling appetite" say the researchers. The proof as to whether it works or not will, of course, be in the pudding, or rather the lack of it! 10th Feb 2008 Polymer to mend bonesA biodegradable polymer made with green solvents can mend broken thigh bones in mice, UK researchers have shown.
The breakthrough means the innovative polymer is a step closer to being used in hospitals. According to Richard Oreffo of Southampton University, who works on the team, human trials could be less than 5 years away. Many researchers are working on similar systems because they promise to avoid the problems of harvesting bone grafts from patients and donors. But a key difficulty is how to make a polymer that's holey and sponge-like, but which also encapsulates a highly expensive and delicate protein or drug inside. The solution Howdle's team has been developing over the last decade is to use supercritical carbon dioxide - a solvent with properties midway between those of a gas and a liquid. Formed under pressure, the supercritical fluid melts the polymer and allows any delicate protein to be mixed into it just above body temperature. When the pressure is released, carbon dioxide gas foams up this mixture, automatically forming the porous scaffold ready-coated with active drug or protein.
10th Feb 2008 Genetics of Prostate CancerDr Ros Eeles & Professor Doug EastonChris - Now also in the news this week scientists have been looking into the genetics of prostate cancer. That’s actually the most common cancer that us guys suffer from. The Naked Scientists’ own Kat Arney actually works off air at Cancer Research UK. She’s going to let us know what this paper published in the journal Nature Genetics is all about...
Ros - What the study did was that we analysed DNA, genetic material from blood samples from over 10,000 men and we compared genetic variance in men who had prostate cancer with a control group and in collaboration with the Protec study. Men who were in that study gave blood samples and we used their samples as controls. What we did was we ran genetic experiments and they looked for genetic variations, changes in the basis of the DNA code looking to see if the men with prostate cancer had a different overall profile from men who had a very low risk in the control group. We found there was a marked difference, particularly in seven areas of the genome. Kat - This kind of study was only possible thanks to recent advances in DNA analysis. Another of the study’s authors, Professor Doug Easton, explains more. Doug - In the period since the human genome became sequenced we’ve been able to identify many millions of genetic changes, perhaps about 10 million that are known. But at the same time we’ve also managed to develop a particular technology based on the arrays of these variants or SNPs which allow very large numbers of them to be tested simultaneously. Also the costs have come down a lot so it’s now possible to test many hundreds of thousands of SNPs on many thousands of people and that’s really made the search for these more common genetic variants possible when it wasn’t possible before. Kat - But what does this all mean for the 30,000 men who are diagnosed with prostate cancer every year in the UK? Well, right now probably not a lot but the hope is that in the future these new genes may lead to better screening tests and even more effective targeted treatments. February 2008 Wattage Wasted While WalkingProfessor Max Donelan, Simon Fraser UniversityChris - We’re now going to be joined by Professor Max Donelan. He’s a researcher at Simon Fraser University in Canada and he’s found a way to turn people into the human equivalent of a Hybrid car. Max, tell us a little bit more. How does this work?
Chris - It sounds a bit counter-intuitive to think that your legs would be so inefficient, that they need help in slowing down and that you can actually get useful energy out of this. Max - Yes, I think it is a little counter intuitive but the main point: if you think about walking at a constant speed on the level then there’s no net change in your mechanical energy so on average you’re not moving any faster or any slower. You’re not going uphill and downhill so that means for every little bit of energy that your muscles put in, something also has to take it away. It’s mostly your muscles that take it away. You don’t need them to do it, you could use something like a generator instead. The generator can take the mechanical energy away from the body and put it through the generator and produce electricity at the same time. Chris - So in other words, as your leg’s swinging to return to the starting position so you can take the next step you would normally need a muscle to kick in and stop the leg from moving at that point. Your generator exploits that effect and instead of the muscle doing that work you’re diverting that effort through your generator and it recovers the energy the body would otherwise have to expend. Max - That’s exactly right. So where we do it is at the knee and towards the end of the swing phase – so when you’re moving your foot forwards to begin another step. Your hamstring muscles, which are the muscles down the back of your leg, they turn on to slow down your knee extension. Our device mounts at the knee that generator engages at that period and helps those hamstring muscles in slowing down the extension of the knee. We can measure this through the fact that when we use the generator it actually allows those muscles to turn down by about 15%. The muscle activity decreases. Chris - The difference in the energy expenditure is what you’re generating with your device. Max - The idea is that people don’t have a difference in energy expenditure, so generating electricity or not generating it is about the same effort you put in, but you still get the electricity out. So you’re getting 5W of electricity without increasing their effort by a meaningful amount. Chris - So what does this device look like when it’s in situ on a person? Is it very ungainly, is it going to get in the way? Max - In the current version I would say it is a bit ungainly so it looks like a normal orthopaedic knee brace with a chassis mounted to the side of it. It’s a bit bulky and a bit big but that’s because it’s really designed for convenient experimentation so you can pull gears out and generators out. The final version will be less than a kilogram and it will easily sit underneath a pair of pants. Currently too big but no problem getting it smaller. Chris - When someone’s wearing this thing how much energy physically are they able to produce with it? Max - There’s two modes. One mode gives 5W of electric and for context 5W is enough to charge ten mobile phones at the same time or to produce ten minutes of call time for one minute of walking. That’s not to say I think we’re going to charge mobile phones in the near future but it gives you some context of how much power. Chris - I’m not being flippant, Max, if I want to charge my mobile phone I plug it in. So why would I want this? Max - I think you’re absolutely right. For us plugging in a mobile phone is just a matter of convenience, but for many people their lives depend upon resources for power. Consider for example if you had a powered prosthetic leg or a power device that helped you walk every stroke for you it’s not always as simple as plugging it in. For example, some of these prosthetic legs might run out of power within four hours or so. If you can use your healthy leg to generate some electricity to power your artificial leg then you can walk farther. Dave - I was wondering whether you could put it into a mode so that when you’re walking downhill or down a big mountain you can make it absorb lots and lots of energy. I find that very, very uncomfortable when walking out in mountains. Max - That’s a great question so, you’ve hit on it exactly. Walking downhill, there’s a lot more energy available because essentially what your muscles are doing is making sure that you don’t arrive at the bottom at the speed that gravity wants you to. They’re taking the potential energy you had at the top of the hill and your muscles are dissipating it all as heat so you walk down it in a controlled way. If you can use a generator to do that instead you can produce lots and lots of electricity. We find that if you walk down a hill you produce more electricity or if you walk faster. Chris - Thank you very much, Max. February 2008
Rising Stars - In-Wall Wax for Comfy ClimateMatthew Richardson
While these methods show promise understanding air flows can be complex and sometimes we’re just tempted to turn on the aircon and forget the cost. Increasingly though, natural ventilation will have a vital role to play in maintaining the climate outside our buildings as well as comfort within. February 2008 Chemistry World - 3D TV, Biofuel Debt and Reading RNAMark Peplow, Chemistry WorldChris - Time to catch up with the editor of Chemistry world. That’s Mark Peplow. Hello Mark. Mark - Hello Chris. Chris - 3D television, sounds fantastic, even on the radio!
Chris - Three minutes, that’s not a very fast frame rate if I’m honest. Mark - I know. I guess the crucial thing about this is that it’s a proof of principal that it can be done at all. We talked to a hologram chemistry expert called Kevin Davidson who’s at the University of Cambridge here. He pointed out that there’s a lot of work gone on in this area but no one’s really demonstrated this ability to do this so reliably and at least repeat time after time. Chris - So it’s gonna be a little while before we can play a game of chess like they do on Star Wars with those kind of figures that act it out on the board for us. Mark - Yes, absolutely, although that would be cool, wouldn’t it. Chris - I can’t wait for those days actually. What’s this about biofuels and carbon debts? Mark - Yeah, biofuels have been getting a rough ride lately. The Royal Society which is Britain’s major academy of sciences has put out some major warnings recently. About policy makers rushing too quickly to adopt new biofuel policies. The idea is that rather than burning petrol which we get from oil out of the ground it would be better to get fuel for the car from plants. Plants grow by sucking carbon dioxide out of the atmosphere and we’re trying to reduce the amount of carbon dioxide we’re putting out to reduce the rate of global warming. Chris - That’s good isn’t it? You want the plants to take the CO2 out of the atmosphere and turn them into fuel so there’s no net carbon gain. Why should there be a problem with that? Mark - Absolutely. The devil is in the detail as with all of these things. As people have started to grow more and more biofuels, a good example is sugar cane in Brazil where they turn that into fuel for cars (ethanol), people are doing what’s called lifecycle analysis. They’re basically looking at all of the energy that you need to put in to make these fuels and also look at all of the carbon that comes out when you’re making these fuels. The latest pair of studies which was just published in Science magazine on Friday really paints a very damning picture. Effectively when you cultivate land to grow any biofuel you rack up this carbon debt. You’re releasing so much carbon that was trapped in the soil that it can take sometimes centuries to regain and repay that carbon debt through the advantages of using biofuels. Chris - So the moral of this story is there’s no quick fix, is there? Mark - Absolutely. It’s interesting because people usually talk about the Brazilian example of using sugar cane as probably the best biofuel to use. They’ve found it still took 17 years to repay the carbon taken from when, for example, a random tract of savannah was ploughed up to plant that stuff. Chris - So there’s lots and lots of things to consider rather than just the here and now. What’s this about reading the genetic code directly because this sounds amazing! Mark - Yeah. This sounds like really Star Trek stuff and it’s really exciting actually. We’re all used to this idea of DNA fingerprinting. This relies on a chemical reaction called the polymerase chain reaction. What that means is you have this smear of blood that you find in CSI, there will be millions and millions of molecules of DNA in there but still not enough to get an exact chemical read on the data that’s recorded in that DNA. You have to do this reaction that amplifies the DNA sample by multiplying the molecules over and over again in the sample until you’ve got enough to do a proper analysis. Now, that takes a laboratory, it takes time and it can introduce errors. A group in Dortmund in Germany have found a way. They’ve proved a principal that they can read a single molecule of not DNA but its chemical cousin RNA using a device which is a special combination, basically, of two different techniques. What it looks like, really is a tiny, tiny record player needle where the tip of it is just 20nm across. It’s hooked up to a laser. What happens is that the tip reads along the length of a single molecule of RNA and guides the laser as it goes. The laser will illuminate the section of the molecule and the light that comes back carries the characteristic signature of the chemical bases as they’re called which holds the data in RNA. They’ve proved that although the laser blast will illuminate maybe half a dozen bases at once because the tip moves along it one base at a time. They can literally read along and show that as they move this tip along they can read each base as it comes along. At the moment this requires some big bits of kit and it’s pretty time consuming but it shows that you can read this single molecule of genetic code. Because of the advances that have come along in these techniques it means that over the coming years it should get faster, cheaper and easier. Chris - It’s amazing to think how far we’ve come because you say it’s big and bulky but then so was the polymerase chain reaction when we first started. Thank you for coming in, Mark. February 2008 Pirate Bay on the PlankChris VallanceMeera - I’ve met up with our resident tech expert, Chris Vallance to find out what’s going on in the world of technology this month. Hi Chris. Chris Vallance - Hi there. Meera - So there’s been news with Pirate Bay. What’s that?
Meera - They claim they’re not doing anything wrong. Chris Vallance - Yeah, exactly. If you talk to people who support Pirate Bay, they say look, we’re just linking. In a way what we’re doing isn’t any different from what a search engine would do. I spoke to Magnus Eriksson. Now Magnus Eriksson is a spokesperson for Piratbyrån which I think translates as Pirate Bureau. He explains that in his view what Pirate Bay is doing wasn’t that different from what search engines, forums and other websites do. Magnus - The prosecution doesn’t have much to offer here. What he’s trying to imply is that the Pirate Bay, just by starting this service is responsible for what its users stuff on it, that they are somehow aiding them in their corporate infringement. But if this would be a principle that would mean that anyone developing a community site or a forum site or a mail client or something would have to be responsible for what its users do. I mean, it‘s an open service. The consequences when people share the things that matter to them. It seems like that at the moment for copyrighted material. Chris Vallance - Sara Lindbach is a legal specialist with the anti-Piratbyrån. She takes a very different view. Sara - The material from the prosecutors shows reason that they had a daily turnover of $3million and Pirate Bay has been making [it] possible for millions of people to illegally file share material. They are making a lot of money on the rights holder’s material. Chris Vallance - For the film and recording industry what really marks Pirate Bay out is the fact that they were making a lot of money. This is Jo Oliver, a legal analyst with the IFPI, a body that represents the recording industry. Jo - Pirate Bay has become something of a destination for those who are looking for illegal content and the scale that’s quite staggering. Pirate Bay claims to have 10 million users world-wide so the steps being taken today to file charges are very important to us. Chris Vallance - They would say they’re merely linking to torrents that are already there and that they don’t create those torrents. Sara - As a user you go along to the Pirate Bay and it provides everything you need to get the infringing material. Around the world similar types of services have made the same argument but in the end the courts found that they were liable for what they were doing. I think the difference is Pirate Bay is set up to exploit illegal content. It’s a lot easier to find pirate material in Pirate Bay than it is doing a Google search online. Chris Vallance - In a way I think what you see emerging is a question about degree. For the prosecutors what Pirate Bay was doing was so obviously about getting copies of films in their view for people who support Piratbyrån, what they’re doing isn’t so different from what the search engines enable you to do. There’s definitely a bit of a legal crack down on people who are sharing and engaging in the kind of activity that Pirate Bay does. Meera - Well, it will be really interesting to see how that turns out. Is there anything else going on in the world of tech at the moment? Chris Vallance - Well, I don’t think we could get away without mentioning Microsoft and Yahoo. There’s a $23billion offer Microsoft has made for Yahoo. It’s interesting because obviously Microsoft’s main competitor is Google. But Google and Microsoft are very different business models. Google sees our tech-future, if you like, as being very much based on the web. But for Microsoft as a software maker, still very much focussed around the PC. You have Microsoft producing Office software that will let you do spreadsheets and word processing on your PC. Google producing Google Docs and Google spreadsheets let you do it on the web. Two very different philosophies. If you look at Microsoft’s move for Yahoo, well is this Microsoft trying to get into Google’s territory? Not just competing on search because obviously Google dominates the search market but it’s more about the direction of our future computer use. I think what’s interesting about Yahoo, they own some very interesting properties. They own Flickr, del.icio.us, they own Upcoming, they‘re heavily involved with OpenID. Also what’s interesting is the reaction from the community of users because you have Flickr groups now saying we don’t want Microsoft owning Flickr, wondering how that’s going to go if Yahoo suddenly becomes owned by a software producer. Of course, in all of this you’ve got Google who are now trying to snuggle up to Yahoo in an effort to put off that Microsoft bid. Above that you’ve got the competition regulators and how are they going to view a very big merger between two big companies involved in the internet computing space. There’s a lot still to play out with this. February 2008
Which is Diet?If you are ever in a foreign country and don't know which can of drink is the sugary one, here is a way to find out. What you need
What to DoFill a sink with water that is deeper than your cans are high. Put the two cans in the water. What happens? What may HappenYou should find that the diet can floats and the sugary one sinks.
What is going on?Whether something floats or sinks is all to do with how much it weighs for its size - its density. Large and light things tend to float, while small heavy things tend to sink. To be more precise, if something is heavier than the water it is taking the space of it will sink, otherwise it will float. The two cans are exactly the same size and sealed so the only thing that could affect whether they float or not is how much they weigh. We weighed both cans and noticed a significant difference.
This means that the sugary drink is 12g heavier for the same size of can, which makes it heavier than a can's worth of water and it will sink.
Why is a can of sugary drink heavier than a diet one?It is all to do with how they are made sweet. The sugary can as the name suggests uses sugar, about 35g of it, to give it that sweet taste people seem to love. On the other hand diet drinks use sweeteners to provide the sweetness. Sweeteners are molecules which trigger the same receptors on your taste buds as sugar does, but they stick much better and stay on for much longer than a sugar molecule does. This means that a gram of a sweetener such as aspartame tastes 180 times sweeter than sugar, so you need to add far less of it. Sugar is about 1.6 times as dense as fresh water so a mixture of sugar and water will be denser than water and so sink. |
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Why do some places have 2 tides a day and others 4?Why do certain parts of the world such as the gulf of Mexico have only two tides a day: one high and one low when other bits of the world have four tides a day? Jay de Salvo |
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First of all 99% of the world just has 2 tides a day and the reason for that is basically the moon and the sun pull on the Earth and on the water around it. If you’re close to something massive it’s got a stronger attraction due to gravity than something farther away. Water on the side of the Earth closest to the moon is going to get pulled the hardest and the Earth which is in the middle is doing to get pulled slightly less hard and the water on the far side is going to get pulled even less hard. So you tend to get two bulges of water: one is the bulge of water close to the moon and the other bulge of water on the other side which is getting left behind. That’s the reason why most places get 2 tides a day. Some places get 4 – the only place I know about it is Southampton, Portsmouth in the UK by the Isle of Wight. If you look very closely at the map of the Isle of Wight it has funnels on each side of the channel just north of it. As the water rushes up the channel it sort of piles into these funnels and then as it gets narrower the wave gets higher. You actually get a high tide as the water rushes up. You get another one on the other funnel as the water rushes back down the channel so you get twice as many tides as you should have. |
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February 2008 |
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Why do I see lights when I do exercise?Sometimes when I stand up or I exert myself I see little white lights or firework displays in my vision. What is that? Jason, Canada |
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That’s because when you stand up all of the blood which is circulating round the body suddenly has this big force of gravity pushing it straight down into your legs. The amount of blood coming back up from your legs into you heart to be pumped out into your brain drops. Your retina, the part of the eye that converts light into signals that the brain can understand has the highest metabolic rate of any tissue in the body so if the blood flow to the retina drops very, very slightly for a fraction of a second it starts to fire off abnormal signals. Those are the white lights that you see. |
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February 2008 |
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