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Basically his premise was that for 100s of 1000s of years man has evolved to drink dirty water and bacteria forming a large part of the human body, by drinking clean water over the last 2000 years we have not enough bacteria and parasites so people get more inflammation diseases like MS and even some cancers.. ?
Although there is something to be said for microbes protecting us against certain diseases. I can't remember an example, but i remember something about people with worms having a reduced incidence of something or other. Will have to do some research on this one.